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Chaiken Research Group Publications

2016


Parajuli B, Acharya K, Yu R, Ngo B, Rashad AA, Abrams CF, Chaiken IM
Biochemistry, , 2016


Moraca F, Acharya K, Melillo B, Smith AB 3rd, Chaiken I, Abrams CF
J Chem Inf Model, 6(10):2069-2079, 2016


Kalyana Sundaram RV, Li H, Bailey L, Rashad AA, Aneja R, Weiss K, Huynh J, Bastian AR, Papazoglou E, Abrams C, Wrenn S, Chaiken I
Biochemistry, 55(3):447-58, 2016

2015


Chaiken I, Rashad AA
Future Med Chem, 7(17):2305-10, 2015


Bailey LD, Kalyana Sundaram RV, Li H, Duffy C, Aneja R, Rosemary Bastian A, Holmes AP, Kamanna K, Rashad AA, Chaiken I
ACS Chem Biol, 10(12):2861-73, 2015


Rashad AA, Kalyana Sundaram RV, Aneja R, Duffy C, Chaiken I
J Med Chem, 58(18):7603-8, 2015


Aneja R, Rashad AA, Li H, Kalyana Sundaram RV, Duffy C, Bailey LD, Chaiken I
J Med Chem, 58(9):3843-58, 2015

2014


Bastian AR, Nangarlia A, Bailey LD, Holmes A, Kalyana Sundaram RV, Ang C, Moreira DRM, Freedman K, Duffy C, Contarino M, Abrams CF, Root M, Chaiken IM
Journal of Biological Chemistry, 290(1): 529–543, 2014


Fraietta JA, Mueller YM, Lozenski KL, Ratner D, Boesteanu AC, Hancock AS, Lackman-Smith C, Zentner IJ, Chaiken IM, Chung S, LeGrice SF, Snyder BA, Mankowski MK, Jones NM, Hope JL, Gupta P, Anderson SH, Wigdahl B, and Katsikis PD
Antimicrob Agents Chemotherapy. 2014 Dec; 58(12): 7056-71.


Courter JR, Madani N, Sodroski J, Schön A, Freire E, Kwong PD, Hendrickson WA, Chaiken IM, LaLonde JM, and Smith AB
3rd. Accounts in Chemical Research. 2014 Apr 15;47(4):1228-37


Emileh A, Duffy C, Holmes AP, Rosemary Bastian A, Aneja R, Tuzer F, Rajagopal S, Li H, Abrams CF, and Chaiken IM
Biochemistry. 2014 Jun 3; 53(21): 3403-3414

2013

"Mode of Action of the Sulfhydryl Group in Virolytic Peptide Triazole Thiol Inhibitors of HIV-1"
Bailey LD, Duffy C, Li H, Bastian AR, Emileh A, and Chaiken IM
Proc. of 23rd American Peptide Symposium. Prompt Scientific Publishing, San Diego, 2013. Print


Bastian AR, Contarino M, Bailey LD, Aneja R, Moreira RMD, Freedman K, McFadden K, Duffy C, Emileh A, Leslie G, Jacobson JM, Hoxie JA, and Chaiken IM
Retrovirology. 2013, 10: 153


Li H, Aneja R, and Chaiken I
Molecules. 2013 Aug 16;18(8):9797-817


Contarino M, Bastian AR, Sundaram RVK, McFadden K, Duffy C, Gangupomu V, Baker M, Abrams C, and Chaiken IM
Antimicrobial Agents and Chemotherapy. (10): 4743-50, 2013


Emileh A, Tuzer F, Yeh H, Umashankara M, Moreira DR, LaLonde J, Bewley C, Abrams C, and Chaiken IM
Biochemistry. 52: 2245-2261, 2013


Freedman KJ, Bastian AR, Chaiken I, and Kim MJ
Small. 2013 Mar 11; 9(5): 750-759

2012


Kamanna K, Aneja R, Duffy C, Kubinski P, Rodrigo Moreira D, Bailey LD, McFadden K, SchÓ§n A, Holmes A, Tuzer F, Contarino M, Freire E, and Chaiken IM
ChemMedChem, 2012


Tuzer F, Madani M, Kantharaju, Zentner I, LaLonde J, Holmes A, Upton E, Rajagopal S, McFadden K, Contarino M, Sodroski, and Chaiken IM
Proteins: Structure, Function, and Bioinformatics 2012, Proteins. 2013 Feb;81(2):271-90


McFadden K, Fletcher P, Rossi F, Kantharaju, Umashankara M, Pirrone V, Rajagopal S, Gopi H, Krebs FC, Martin-Garcia J, Shattock, RJ, and Chaiken IM
Antimicrob Agents Chemother. 56(2): 1073-80, 2012

2011


Mero A, Ishino T, Chaiken IM, Veronese FM, and Pasut G
Pharm Res. 2011 Oct;28(10):2412-21. Epub May 25 2011


Ishino T, Economou NJ, McFadden K, Zaks-Zilberman M, Jost M, Baxter S, Contarino MR, Harrington AE, Loll PJ, Pasut G, Lievens S, Tavernier J, and Chaiken IM
Biochemistry. 2011 Sep 6;50(35):7546-56. Epub Aug 10 2011


Bastian AR, Kantharaju, McFadden K, Duffy C, Rajagopal S, Contarino M, Papazoglou E, and Chaiken IM
ChemMedChem. 6: 1-5, 2011


Gift SK, McFadden K, Zentner IJ, Rajagopal S, Zhang MY, Dimitrov DS, and Chaiken IM
Biochemistry. 50: 2769–2779, 2011


Gift SK, Zentner I, Schon A, McFadden K, UmaShankara M, Rajagopal S, Contarino M, Duffy C, Courter JR, Zhang MY, Gershoni J, Cocklin S, Dimitrov DS, Smith AB III, Freire E, and Chaiken IM
Biochemistry. 50: 2756–2768, 2011

2010


Umashankara M, McFadden K, Zentner I, Schön A, Rajagopal S, Tuzer F, Kuriakose SA, Contarino M, Lalonde J, Freire E, and Chaiken IM
ChemMedChem. 2010


Lee HS, Contarino M, Umashankara M, Schon A, Freire E, Smith AB, Chaiken IM, and Penn LS
Analytical and Bioanalytical Chemistry. Volume 396, Number 3, 1143-1152. 2010

2009


Gopi H, Cocklin S, Pirrone V, McFadden K, Tuzer F, Zentner I, Ajith S, Baxter S, Jawanda N, Krebs F, and Chaiken IM
Journal of Molecular Recognition 22: 169-174, 2009

"Isotropic display of biomolecules on CNT arrayed nanostructures"
Contarino M, Withey G, and Chaiken IM
In: Biosensing Using Nanomaterials. Arben Merkoci, editor. Wiley Interscience, 2009. pp. 39-65

2008


Gopi H, Pirrone V, LaLonde J, Madani N, Tuzer F, Baxter S, Zentner I, Cocklin S, Miller S, Krebs F, Sodroski J, and Chaiken IM
Journal of Medicinal Chemistry 51: 2638-47, 2008


Ishino T, Harrington A, Gopi H, and Chaiken IM
Current Pharmaceutical Design 14: 1231-9, 2008


Ishino T, Harrington A, Zaks-Zilberman M, Scibek J, and Chaiken IM
Cytokine 42: 179-90, 2008


Zaks-Zilberman M, Harrington A, Ishino T, and Chaiken IM
Journal of Biological Chemistry 283: 13398-406, 2008


Kamat V, Donaldson J, Kari C, Quadros M, Lelkes P, Chaiken I, Cocklin S, Williams J, Papazoglou E, and Ulrich R
Cancer Biology and Therapy 7: 726-33, 2008


Cannon G, Yi Y, Ni H, Stoddard E, Scales DA, Van Ryk DI, Chaiken I, Malamud D, and Weissman D
Journal of Immunology 181: 2065-2070, 2008

2007


McFadden K, Cocklin S, Gopi HN, Baxter S, Ajith S, Mahmood N, Shattock R, and Chaiken IM
Proteins: Structure, Function and Bioinformatics 67: 617-629, 2007


Bhattacharya M, Pillalamari U, Sarkhel S, Ishino T, Urbina C, Jamerson B, and Chaiken I
Biopolymers Peptide Science 88: 83-93, 2007

"Machines and networks: protein recognition in biology"
McCourt P, Nickels J, Ishino T, and Chaiken I
In: Handbook of Biosensors and Biochips, Marks, R.S., Lowe, C., Cullen, D.C., Weetall, H. and Karube, I., Eds., John Wiley and Sons, 2007, pp; 61-81


Cocklin S, Gopi, H, Querido B, Nimmagadda D, Kuriakose S, Cicala C, Ajith S, Baxter S, Arthos J, Martin-Garcia J, and Chaiken I
Journal of Virology 81: 3645-8, 2007

2006


Gopi HN, Tirupula KC, Baxter S, Ajith S, and Chaiken IM
ChemMedChem 1: 54-57, 2006


Ishino T, Pillalamarri U, Panarello D, Bhattacharya M, Urbina C, Horvat S, Sarkhel S, Jameson B, and Chaiken IM
Biochemistry 45: 1106-1115, 2006


Cocklin S, Jost M, Robertson NM, Weeks SD, Weber H-W, Young E, Seal S, Zhang C, Mosser E, Loll PJ, Saunders AJ, Rest R, and Chaiken IM
Journal of Molecular Recognition 19: 354-62, 2006


Contarino M, Sergi M, Harrington A, Lazareck A, Xu J, and Chaiken IM
Journal of Molecular Recognition 19: 363-371, 2006


Yang X, Lipchina I, Cocklin S, Chaiken I, and Sodroski J
Journal of Virology, 80: 11404-8, 2006

2005


Ishino T, Urbina C, Bhattacharya M, Panarello D, and Chaiken IM
Journal of Biological Chemistry 280: 22951 22961, 2005

"Advancement and utilization of biosensors for protein interaction analysis and proteomics"
Cocklin S, Ishino T, Sergi M, Nedelkov D, Nelson R, and Chaiken IM
Protein-Protein Interactions: A Molecular Cloning Manual. E. Golemis and P. Adams, eds., Cold Spring Harbor Press, Cold Spring Harbor, NY, 377-398, 2005


Martín-García J, Cocklin S, Chaiken IM, and González-Scarano F
Journal of Virology 79: 6703-6713, 2005


Ishino T, Robertson N, and Chaiken IM
Vitamins and Hormones (Litwack, G., ed) 71: 321-344, Academic Press, NY, 2005

2004


Biorn AC, Cocklin S, Madani N, Si Z, Ivanovic T, Samanen J, Van Ryk DI, Pantophlet R, Burton DR, Freire E, Sodroski J, and Chaiken IM
Biochemistry 43: 1928-1938, 2004


Ishino T, Pasut G, Scibek J, and Chaiken IM
Journal of Biological Chemistry 279: 9547-9556, 2004


Ruchala P, Varadi G, Ishino T, Scibek J, Bhattacharya M, Urbina C, Van Ryk D, Uings I, and Chaiken IM
Biopolymers 73: 556-568, 2004


Sergi M, Zurawski J, Cocklin S, and Chaiken I
Journal of Molecular Recognition 17: 198-208, 2004


Si Z, Madani N, Cox JM, Chruma JJ, Klein JC, Schon A, Phan N, Wang L, Biorn AB, Cocklin S, Chaiken I, Freire E, Smith AB, and Sodroski JG
Proceedings of the National Academy of Science U.S.A., 101: 5036-4, 2004


Wu S-J and Chaiken IM
Methods in Molecular Biology 249: 93-110, 2004


Leavitt SA, Schön A, Klein JC, Manjappara U, Chaiken IM, and Freire E
Current Protein and Peptide Science, 5: 1-8, 2004

 
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The Chaiken Research Group investigates the fundamental nature of protein interactions in solution and in cells, and their roles in disease pathogenesis.